The Government says it will add more information next year and is confident all the data appearing on the website is accurate.
The Victorian Government says it is worried manipulated data will appear on the new website.
Victorian Health Minister David Davis has told AM the information provided could have been manipulated under the previous state Labor government.
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"The Victorian auditor-general has pointed directly to data manipulation occurring in key public hospitals, so the overall quality of the data is questionable," he said.
"One concern is that the Commonwealth simply accepts data without proper quality control."
But Federal Health Minister Nicola Roxon says the Commonwealth has checks and balances in place.
"The material has been provided by each state and territory but it has been checked and rechecked by the Institute of Health and Welfare, an independent and very credible body, so we're confident they've done their work well," she said.
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